/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011876_1894818_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011876_1894818_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17635048 | 100.00 % | 8817524 | 100.00 % | 8817524 | 100.00 % |
| General Reads | 10605243 | 60.14 % | 5375023 | 60.96 % | 5230220 | 59.32 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 3 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7029798 | 39.86 % | 3442498 | 39.04 % | 3587300 | 40.68 % |
| Bisulfite_reads C2T | 5453519 | 30.92 % | 2763229 | 31.34 % | 2690290 | 30.51 % |
| Bisulfite_reads G2A | 5151731 | 29.21 % | 2611797 | 29.62 % | 2539934 | 28.81 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4092258 |
| Average Unique | 46.41 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 388012972 | 28.57 % | 183627467 | 27.05 % | 204385505 | 30.10 % |
| Base Counts Overall C | 275796213 | 20.31 % | 121255701 | 17.86 % | 154540512 | 22.76 % |
| Base Counts Overall G | 287272125 | 21.16 % | 159362969 | 23.47 % | 127909156 | 18.84 % |
| Base Counts Overall T | 389064544 | 28.65 % | 205818791 | 30.31 % | 183245753 | 26.99 % |
| Base Counts Overall N | 17752842 | 1.31 % | 8884420 | 1.31 % | 8868422 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5049962 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8817524 |
| 76 | 8817524 |
Insert Size Plot
| Insert Size Histogram |
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