/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011877_1894819_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011877_1894819_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17428614 | 100.00 % | 8714307 | 100.00 % | 8714307 | 100.00 % |
| General Reads | 11423728 | 65.55 % | 5797413 | 66.53 % | 5626315 | 64.56 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 6004884 | 34.45 % | 2916893 | 33.47 % | 3087991 | 35.44 % |
| Bisulfite_reads C2T | 5884291 | 33.76 % | 2984836 | 34.25 % | 2899455 | 33.27 % |
| Bisulfite_reads G2A | 5539439 | 31.78 % | 2812578 | 32.28 % | 2726861 | 31.29 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4404774 |
| Average Unique | 50.55 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 399306063 | 29.75 % | 180699514 | 26.93 % | 218606549 | 32.58 % |
| Base Counts Overall C | 257128785 | 19.16 % | 101828706 | 15.18 % | 155300079 | 23.14 % |
| Base Counts Overall G | 267653647 | 19.94 % | 160036483 | 23.85 % | 107617164 | 16.04 % |
| Base Counts Overall T | 400370646 | 29.83 % | 219657113 | 32.74 % | 180713533 | 26.93 % |
| Base Counts Overall N | 17544137 | 1.31 % | 8779823 | 1.31 % | 8764314 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5426115 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8714307 |
| 76 | 8714307 |
Insert Size Plot
| Insert Size Histogram |
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