/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011878_1894820_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011878_1894820_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 16420656 | 100.00 % | 8210328 | 100.00 % | 8210328 | 100.00 % |
| General Reads | 11007366 | 67.03 % | 5590689 | 68.09 % | 5416677 | 65.97 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 5 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5413284 | 32.97 % | 2619634 | 31.91 % | 2793650 | 34.03 % |
| Bisulfite_reads C2T | 5663256 | 34.49 % | 2875306 | 35.02 % | 2787950 | 33.96 % |
| Bisulfite_reads G2A | 5344116 | 32.55 % | 2715388 | 33.07 % | 2628728 | 32.02 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4242737 |
| Average Unique | 51.68 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 379844039 | 30.04 % | 171132267 | 27.07 % | 208711772 | 33.01 % |
| Base Counts Overall C | 238872929 | 18.89 % | 93415341 | 14.78 % | 145457588 | 23.01 % |
| Base Counts Overall G | 248667195 | 19.67 % | 150100675 | 23.74 % | 98566520 | 15.59 % |
| Base Counts Overall T | 380475611 | 30.09 % | 209274660 | 33.10 % | 171200951 | 27.08 % |
| Base Counts Overall N | 16530738 | 1.31 % | 8272313 | 1.31 % | 8258425 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5231638 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8210328 |
| 76 | 8210328 |
Insert Size Plot
| Insert Size Histogram |
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