/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011879_1894821_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011879_1894821_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15363736 | 100.00 % | 7681868 | 100.00 % | 7681868 | 100.00 % |
| General Reads | 10859039 | 70.68 % | 5515261 | 71.80 % | 5343778 | 69.56 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 4 | 0.00 % | 5 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4504688 | 29.32 % | 2166603 | 28.20 % | 2338085 | 30.44 % |
| Bisulfite_reads C2T | 5585628 | 36.36 % | 2835627 | 36.91 % | 2750001 | 35.80 % |
| Bisulfite_reads G2A | 5273420 | 34.32 % | 2679638 | 34.88 % | 2593782 | 33.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4208299 |
| Average Unique | 54.78 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 357542754 | 30.22 % | 160850038 | 27.19 % | 196692716 | 33.25 % |
| Base Counts Overall C | 220681541 | 18.65 % | 84815007 | 14.34 % | 135866534 | 22.97 % |
| Base Counts Overall G | 229206911 | 19.37 % | 139402256 | 23.57 % | 89804655 | 15.18 % |
| Base Counts Overall T | 360113534 | 30.44 % | 198699315 | 33.59 % | 161414219 | 27.29 % |
| Base Counts Overall N | 15462932 | 1.31 % | 7737220 | 1.31 % | 7725712 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5173251 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7681868 |
| 76 | 7681868 |
Insert Size Plot
| Insert Size Histogram |
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