/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011921_1894863_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011921_1894863_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 32502130 | 100.00 % | 16251065 | 100.00 % | 16251065 | 100.00 % |
| General Reads | 27139477 | 83.50 % | 13786109 | 84.83 % | 13353368 | 82.17 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5362653 | 16.50 % | 2464956 | 15.17 % | 2897697 | 17.83 % |
| Bisulfite_reads C2T | 13971294 | 42.99 % | 7094460 | 43.66 % | 6876834 | 42.32 % |
| Bisulfite_reads G2A | 13168183 | 40.51 % | 6691649 | 41.18 % | 6476534 | 39.85 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 10448786 |
| Average Unique | 64.30 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 821621497 | 32.83 % | 345066655 | 27.58 % | 476554842 | 38.08 % |
| Base Counts Overall C | 406055928 | 16.22 % | 113784591 | 9.09 % | 292271337 | 23.36 % |
| Base Counts Overall G | 422917819 | 16.90 % | 301209208 | 24.07 % | 121708611 | 9.73 % |
| Base Counts Overall T | 819356261 | 32.74 % | 474901496 | 37.95 % | 344454765 | 27.53 % |
| Base Counts Overall N | 32712505 | 1.31 % | 16370055 | 1.31 % | 16342450 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 12863438 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 16251065 |
| 76 | 16251065 |
Insert Size Plot
| Insert Size Histogram |
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