/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs/EXTERNAL-K011922_1894864_2
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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs LANE EXTERNAL-K011922_1894864_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 45913942 | 100.00 % | 22956971 | 100.00 % | 22956971 | 100.00 % |
| General Reads | 36683539 | 79.90 % | 18628096 | 81.14 % | 18055443 | 78.65 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 12 | 0.00 % | 6 | 0.00 % | 6 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 9230391 | 20.10 % | 4328869 | 18.86 % | 4901522 | 21.35 % |
| Bisulfite_reads C2T | 18867888 | 41.09 % | 9577111 | 41.72 % | 9290777 | 40.47 % |
| Bisulfite_reads G2A | 17815663 | 38.80 % | 9050991 | 39.43 % | 8764672 | 38.18 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 14216509 |
| Average Unique | 61.93 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1152418549 | 32.60 % | 488182397 | 27.62 % | 664236152 | 37.58 % |
| Base Counts Overall C | 579032518 | 16.38 % | 165583775 | 9.37 % | 413448743 | 23.39 % |
| Base Counts Overall G | 606677547 | 17.16 % | 427337291 | 24.17 % | 179340256 | 10.15 % |
| Base Counts Overall T | 1151024344 | 32.56 % | 663452460 | 37.53 % | 487571884 | 27.58 % |
| Base Counts Overall N | 46220576 | 1.31 % | 23130844 | 1.31 % | 23089732 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 17461624 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 22956971 |
| 76 | 22956971 |
Insert Size Plot
| Insert Size Histogram |
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