/EXTERNAL BLUEPRINT/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs

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SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	314425866	100.00 %	157212933	100.00 %	157212933	100.00 %
General Reads	247840054	78.82 %	125895955	80.08 %	121944099	77.57 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	53	0.00 %	28	0.00 %	25	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	66585759	21.18 %	31316950	19.92 %	35268809	22.43 %
Bisulfite_reads C2T	127607330	40.58 %	64795588	41.22 %	62811742	39.95 %
Bisulfite_reads G2A	120232777	38.24 %	61100395	38.86 %	59132382	37.61 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	94963286
Average Unique	60.40 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	7861264749	32.47 %	3330950418	27.52 %	4530314331	37.42 %
Base Counts Overall C	4029437016	16.64 %	1217590975	10.06 %	2811846041	23.23 %
Base Counts Overall G	4206845703	17.38 %	2900299678	23.96 %	1306546025	10.79 %
Base Counts Overall T	7796745000	32.20 %	4498164096	37.16 %	3298580904	27.25 %
Base Counts Overall N	316499214	1.31 %	158390674	1.31 %	158108540	1.31 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	116897858

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011921_1894863_2
EXTERNAL-K011873_1894815_2
EXTERNAL-K011879_1894821_2
EXTERNAL-K011878_1894820_2
EXTERNAL-K011872_1894814_2
EXTERNAL-K011875_1894817_2
EXTERNAL-K011877_1894819_2
EXTERNAL-K011857_1894799_2
EXTERNAL-K011922_1894864_2
EXTERNAL-K011876_1894818_2
EXTERNAL-K011874_1894816_2