/EXTERNAL BLUEPRINT/mapping_coverage/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs
BACK
SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
213683903 |
100% |
15217680563 |
100% |
| Mapped |
208331278 |
97.50 % |
14810881063 |
97.33 % |
| Passed |
125715796 |
58.83 % |
8532104431 |
56.07 % |
| NotPassed |
82615482 |
38.66 % |
6278776632 |
41.26 % |
| |
|
|
|
|
| LowMAPQ |
45341398 |
21.22 % |
3445946248 |
22.64 % |
| MateUnmapped |
5352625 |
2.50 % |
406799500 |
2.67 % |
| Duplicate |
34182135 |
16.00 % |
2597842260 |
17.07 % |
| BadOrientation |
8 |
0.00 % |
608 |
0.00 % |
| LargeInsertSize |
23282 |
0.01 % |
1769432 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3068659 |
1.44 % |
233218084 |
1.53 % |
| Unmapped |
5352625 |
2.50 % |
406799500 |
2.67 % |
Base Level Counts
| Bases |
# |
% |
| Total |
9154790672 |
100% |
| Passed |
7700948279 |
84.12 % |
| Trimmed |
548448703 |
5.99 % |
| Clipped |
27432200 |
0.30 % |
| Overlapping |
595254041 |
6.50 % |
| LowQuality |
282707449 |
3.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |