/EXTERNAL BLUEPRINT/methylation/K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs
BACK
SAMPLE K011857_K011872_K011873_K011874_K011875_K011876_K011877_K011878_K011879_K011921_K011922_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22832134 |
1062894 |
4.66 % |
| NonRefCpG |
721100 |
3306 |
0.46 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4263368 |
11.95 % |
87856 |
3.27 % |
299367 |
29.70 % |
1179 |
7.83 % |
| Intermediate (0.3-0.7) |
11130831 |
31.21 % |
469681 |
17.47 % |
355254 |
35.24 % |
3293 |
21.86 % |
| Methylated (0.7-1) |
20274644 |
56.84 % |
2130676 |
79.26 % |
353417 |
35.06 % |
10589 |
70.31 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.750 |
|
0.870 |
|
0.540 |
|
0.840 |
|