/EXTERNAL BLUEPRINT/K011859_K011888_K011889_K011890_K011891_K011892_K011893_K011925_K011926_9_lane_gembs/EXTERNAL-K011888_1894830_2
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 20161476 | 100.00 % | 10080738 | 100.00 % | 10080738 | 100.00 % |
| General Reads | 7637101 | 37.88 % | 3855479 | 38.25 % | 3781622 | 37.51 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 15 | 0.00 % | 7 | 0.00 % | 8 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 12524360 | 62.12 % | 6225252 | 61.75 % | 6299108 | 62.49 % |
| Bisulfite_reads C2T | 3932792 | 19.51 % | 1984856 | 19.69 % | 1947936 | 19.32 % |
| Bisulfite_reads G2A | 3704324 | 18.37 % | 1870630 | 18.56 % | 1833694 | 18.19 % |
| Concept | Value |
|---|---|
| Unique Fragments | 2972807 |
| Average Unique | 29.49 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 432949098 | 27.89 % | 209282965 | 26.96 % | 223666133 | 28.81 % |
| Base Counts Overall C | 327620915 | 21.10 % | 152359092 | 19.63 % | 175261823 | 22.58 % |
| Base Counts Overall G | 334474473 | 21.55 % | 178119145 | 22.95 % | 156355328 | 20.14 % |
| Base Counts Overall T | 437049945 | 28.15 % | 226251924 | 29.15 % | 210798021 | 27.16 % |
| Base Counts Overall N | 20339221 | 1.31 % | 10203700 | 1.31 % | 10135521 | 1.31 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | NA |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 3656766 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 76 | 10080738 |
| 76 | 10080738 |
| Insert Size Histogram |
|---|
 |