/EXTERNAL BLUEPRINT/mapping_coverage/K011859_K011888_K011889_K011890_K011891_K011892_K011893_K011925_K011926_9_lane_gembs
BACK
SAMPLE K011859_K011888_K011889_K011890_K011891_K011892_K011893_K011925_K011926_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
117476006 |
100% |
8341452173 |
100% |
| Mapped |
115169888 |
98.04 % |
8166187205 |
97.90 % |
| Passed |
46741943 |
39.79 % |
2965663385 |
35.55 % |
| NotPassed |
68427945 |
58.25 % |
5200523820 |
62.35 % |
| |
|
|
|
|
| LowMAPQ |
29104348 |
24.77 % |
2211930448 |
26.52 % |
| MateUnmapped |
2306118 |
1.96 % |
175264968 |
2.10 % |
| Duplicate |
37792769 |
32.17 % |
2872250444 |
34.43 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
59506 |
0.05 % |
4522456 |
0.05 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1471322 |
1.25 % |
111820472 |
1.34 % |
| Unmapped |
2306118 |
1.96 % |
175264968 |
2.10 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3257187556 |
100% |
| Passed |
2691017752 |
82.62 % |
| Trimmed |
193225886 |
5.93 % |
| Clipped |
10542539 |
0.32 % |
| Overlapping |
280981632 |
8.63 % |
| LowQuality |
81419747 |
2.50 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |