/EXTERNAL BLUEPRINT/mapping_coverage/K010413_K010414_K010415_K010416_K010417_K010418_6_lane_gembs
BACK
SAMPLE K010413_K010414_K010415_K010416_K010417_K010418_6_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
145384068 |
100% |
10043267508 |
100% |
| Mapped |
142705921 |
98.16 % |
9842406483 |
98.00 % |
| Passed |
80184308 |
55.15 % |
5153285508 |
51.31 % |
| NotPassed |
62521613 |
43.00 % |
4689120975 |
46.69 % |
| |
|
|
|
|
| LowMAPQ |
33288762 |
22.90 % |
2496657150 |
24.86 % |
| MateUnmapped |
2678147 |
1.84 % |
200861025 |
2.00 % |
| Duplicate |
27106093 |
18.64 % |
2032956975 |
20.24 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
82468 |
0.06 % |
6185100 |
0.06 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2044290 |
1.41 % |
153321750 |
1.53 % |
| Unmapped |
2678147 |
1.84 % |
200861025 |
2.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
5590696800 |
100% |
| Passed |
4525439383 |
80.95 % |
| Trimmed |
335174666 |
6.00 % |
| Clipped |
18027298 |
0.32 % |
| Overlapping |
419383994 |
7.50 % |
| LowQuality |
292671459 |
5.23 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |