/EXTERNAL BLUEPRINT/methylation/K010413_K010414_K010415_K010416_K010417_K010418_6_lane_gembs
BACK
SAMPLE K010413_K010414_K010415_K010416_K010417_K010418_6_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
20097475 |
153544 |
0.76 % |
| NonRefCpG |
896987 |
391 |
0.04 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4012446 |
14.30 % |
14273 |
3.47 % |
337447 |
29.73 % |
212 |
9.34 % |
| Intermediate (0.3-0.7) |
9413562 |
33.54 % |
72552 |
17.65 % |
415350 |
36.60 % |
508 |
22.36 % |
| Methylated (0.7-1) |
14640953 |
52.16 % |
324168 |
78.87 % |
382125 |
33.67 % |
1552 |
68.30 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.870 |
|
0.530 |
|
0.830 |
|