/EXTERNAL BLUEPRINT/mapping_coverage/K011940_K011941_K011942_K011943_K011946_5_lane_gembs
BACK
SAMPLE K011940_K011941_K011942_K011943_K011946_5_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
71743806 |
100% |
4956288821 |
100% |
| Mapped |
70372847 |
98.09 % |
4853466896 |
97.93 % |
| Passed |
38069683 |
53.06 % |
2430729596 |
49.04 % |
| NotPassed |
32303164 |
45.03 % |
2422737300 |
48.88 % |
| |
|
|
|
|
| LowMAPQ |
15703414 |
21.89 % |
1177756050 |
23.76 % |
| MateUnmapped |
1370959 |
1.91 % |
102821925 |
2.07 % |
| Duplicate |
15802860 |
22.03 % |
1185214500 |
23.91 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
16098 |
0.02 % |
1207350 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
780792 |
1.09 % |
58559400 |
1.18 % |
| Unmapped |
1370959 |
1.91 % |
102821925 |
2.07 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2552089200 |
100% |
| Passed |
2123624109 |
83.21 % |
| Trimmed |
157423317 |
6.17 % |
| Clipped |
7786182 |
0.31 % |
| Overlapping |
113573422 |
4.45 % |
| LowQuality |
149682170 |
5.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |