/EXTERNAL BLUEPRINT/methylation/K011940_K011941_K011942_K011943_K011946_5_lane_gembs
BACK
SAMPLE K011940_K011941_K011942_K011943_K011946_5_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
14005762 |
2489 |
0.02 % |
| NonRefCpG |
802724 |
10 |
0.00 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
2347169 |
13.89 % |
162 |
2.27 % |
209082 |
22.91 % |
2 |
3.54 % |
| Intermediate (0.3-0.7) |
6163932 |
36.47 % |
1399 |
19.59 % |
345725 |
37.89 % |
13 |
23.17 % |
| Methylated (0.7-1) |
8389218 |
49.64 % |
5583 |
78.14 % |
357708 |
39.20 % |
41 |
73.28 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.690 |
|
0.870 |
|
0.600 |
|
0.840 |
|