/EXTERNAL BLUEPRINT/mapping_coverage/K011948_K011949_K011950_K011951_K011952_K011953_K011954_K011955_K011971_9_lane_gembs
BACK
SAMPLE K011948_K011949_K011950_K011951_K011952_K011953_K011954_K011955_K011971_9_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
119745891 |
100% |
8548545035 |
100% |
| Mapped |
117572313 |
98.18 % |
8383353107 |
98.07 % |
| Passed |
44028343 |
36.77 % |
2794011387 |
32.68 % |
| NotPassed |
73543970 |
61.42 % |
5589341720 |
65.38 % |
| |
|
|
|
|
| LowMAPQ |
30272358 |
25.28 % |
2300699208 |
26.91 % |
| MateUnmapped |
2173578 |
1.82 % |
165191928 |
1.93 % |
| Duplicate |
41925074 |
35.01 % |
3186305624 |
37.27 % |
| BadOrientation |
6 |
0.00 % |
456 |
0.00 % |
| LargeInsertSize |
7614 |
0.01 % |
578664 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1338918 |
1.12 % |
101757768 |
1.19 % |
| Unmapped |
2173578 |
1.82 % |
165191928 |
1.93 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3105065120 |
100% |
| Passed |
2552679945 |
82.21 % |
| Trimmed |
181710571 |
5.85 % |
| Clipped |
9458615 |
0.30 % |
| Overlapping |
301595118 |
9.71 % |
| LowQuality |
59620871 |
1.92 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |