/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011973_1894915_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011973_1894915_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18643850 | 100.00 % | 9321925 | 100.00 % | 9321925 | 100.00 % |
| General Reads | 6839484 | 36.68 % | 3436992 | 36.87 % | 3402492 | 36.50 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 18 | 0.00 % | 8 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 11804348 | 63.31 % | 5884925 | 63.13 % | 5919423 | 63.50 % |
| Bisulfite_reads C2T | 3526690 | 18.92 % | 1771759 | 19.01 % | 1754931 | 18.83 % |
| Bisulfite_reads G2A | 3312812 | 17.77 % | 1665241 | 17.86 % | 1647571 | 17.67 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2622027 |
| Average Unique | 28.13 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 461469627 | 32.15 % | 172986998 | 24.10 % | 288482629 | 40.19 % |
| Base Counts Overall C | 244528583 | 17.03 % | 56541814 | 7.88 % | 187986769 | 26.19 % |
| Base Counts Overall G | 252738121 | 17.61 % | 192134674 | 26.77 % | 60603447 | 8.44 % |
| Base Counts Overall T | 457959102 | 31.90 % | 286682452 | 39.94 % | 171276650 | 23.86 % |
| Base Counts Overall N | 18881017 | 1.32 % | 9442287 | 1.32 % | 9438730 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3225077 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9321925 |
| 76 | 9321925 |
Insert Size Plot
| Insert Size Histogram |
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