/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011977_1894919_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011977_1894919_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 33963574 | 100.00 % | 16981787 | 100.00 % | 16981787 | 100.00 % |
| General Reads | 5876136 | 17.30 % | 2954303 | 17.40 % | 2921833 | 17.21 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 14 | 0.00 % | 7 | 0.00 % | 7 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 28087424 | 82.70 % | 14027477 | 82.60 % | 14059947 | 82.79 % |
| Bisulfite_reads C2T | 3037902 | 8.94 % | 1526945 | 8.99 % | 1510957 | 8.90 % |
| Bisulfite_reads G2A | 2838248 | 8.36 % | 1427365 | 8.41 % | 1410883 | 8.31 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2200604 |
| Average Unique | 12.96 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 812678858 | 31.08 % | 285406494 | 21.83 % | 527272364 | 40.32 % |
| Base Counts Overall C | 470920779 | 18.01 % | 110614865 | 8.46 % | 360305914 | 27.55 % |
| Base Counts Overall G | 488944553 | 18.70 % | 369438109 | 28.25 % | 119506444 | 9.14 % |
| Base Counts Overall T | 808128939 | 30.90 % | 524996424 | 40.15 % | 283132515 | 21.65 % |
| Base Counts Overall N | 34522069 | 1.32 % | 17141707 | 1.31 % | 17380362 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 2687680 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 16981787 |
| 76 | 16981787 |
Insert Size Plot
| Insert Size Histogram |
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