/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011982_1894924_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011982_1894924_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 26516978 | 100.00 % | 13258489 | 100.00 % | 13258489 | 100.00 % |
| General Reads | 6463186 | 24.37 % | 3244599 | 24.47 % | 3218587 | 24.28 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 20053792 | 75.63 % | 10013890 | 75.53 % | 10039902 | 75.72 % |
| Bisulfite_reads C2T | 3331437 | 12.56 % | 1671958 | 12.61 % | 1659479 | 12.52 % |
| Bisulfite_reads G2A | 3131749 | 11.81 % | 1572641 | 11.86 % | 1559108 | 11.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2466784 |
| Average Unique | 18.61 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 626922273 | 30.70 % | 244738747 | 23.97 % | 382183526 | 37.44 % |
| Base Counts Overall C | 375240268 | 18.38 % | 113281512 | 11.10 % | 261958756 | 25.66 % |
| Base Counts Overall G | 387954361 | 19.00 % | 268139175 | 26.26 % | 119815186 | 11.74 % |
| Base Counts Overall T | 624745216 | 30.60 % | 381362263 | 37.36 % | 243382953 | 23.84 % |
| Base Counts Overall N | 26945188 | 1.32 % | 13381956 | 1.31 % | 13563232 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 2996598 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 13258489 |
| 76 | 13258489 |
Insert Size Plot
| Insert Size Histogram |
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