/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011985_1894927_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011985_1894927_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 23161320 | 100.00 % | 11580660 | 100.00 % | 11580660 | 100.00 % |
| General Reads | 7627072 | 32.93 % | 3859671 | 33.33 % | 3767401 | 32.53 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 8 | 0.00 % | 4 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 15534240 | 67.07 % | 7720985 | 66.67 % | 7813255 | 67.47 % |
| Bisulfite_reads C2T | 3929544 | 16.97 % | 1987413 | 17.16 % | 1942131 | 16.77 % |
| Bisulfite_reads G2A | 3697536 | 15.96 % | 1872262 | 16.17 % | 1825274 | 15.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2976548 |
| Average Unique | 25.70 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 548539731 | 30.76 % | 211716315 | 23.74 % | 336823416 | 37.77 % |
| Base Counts Overall C | 326347787 | 18.30 % | 92475140 | 10.37 % | 233872647 | 26.23 % |
| Base Counts Overall G | 336285067 | 18.86 % | 238836566 | 26.78 % | 97448501 | 10.93 % |
| Base Counts Overall T | 548723428 | 30.77 % | 336997920 | 37.79 % | 211725508 | 23.74 % |
| Base Counts Overall N | 23525627 | 1.32 % | 11684879 | 1.31 % | 11840748 | 1.33 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3636531 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 11580660 |
| 76 | 11580660 |
Insert Size Plot
| Insert Size Histogram |
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