/EXTERNAL BLUEPRINT/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs/EXTERNAL-K011996_1894938_2
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs LANE EXTERNAL-K011996_1894938_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 40459356 | 100.00 % | 20229678 | 100.00 % | 20229678 | 100.00 % |
| General Reads | 27644884 | 68.33 % | 13877563 | 68.60 % | 13767321 | 68.06 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 47 | 0.00 % | 26 | 0.00 % | 21 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 12814425 | 31.67 % | 6352089 | 31.40 % | 6462336 | 31.94 % |
| Bisulfite_reads C2T | 14304412 | 35.36 % | 7179034 | 35.49 % | 7125378 | 35.22 % |
| Bisulfite_reads G2A | 13340519 | 32.97 % | 6698555 | 33.11 % | 6641964 | 32.83 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 10533202 |
| Average Unique | 52.07 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1054509134 | 33.85 % | 395959582 | 25.42 % | 658549552 | 42.28 % |
| Base Counts Overall C | 481234111 | 15.45 % | 88356169 | 5.67 % | 392877942 | 25.22 % |
| Base Counts Overall G | 493709061 | 15.85 % | 397378644 | 25.51 % | 96330417 | 6.18 % |
| Base Counts Overall T | 1045023923 | 33.54 % | 655524849 | 42.08 % | 389499074 | 25.00 % |
| Base Counts Overall N | 40894183 | 1.31 % | 20465962 | 1.31 % | 20428221 | 1.31 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 13020625 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 20229678 |
| 76 | 20229678 |
Insert Size Plot
| Insert Size Histogram |
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