/EXTERNAL BLUEPRINT/mapping_coverage/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
120881276 |
100% |
8547230103 |
100% |
| Mapped |
118275557 |
97.84 % |
8349195459 |
97.68 % |
| Passed |
49680099 |
41.10 % |
3135940651 |
36.69 % |
| NotPassed |
68595458 |
56.75 % |
5213254808 |
60.99 % |
| |
|
|
|
|
| LowMAPQ |
31371370 |
25.95 % |
2384224120 |
27.89 % |
| MateUnmapped |
2605719 |
2.16 % |
198034644 |
2.32 % |
| Duplicate |
36027760 |
29.80 % |
2738109760 |
32.04 % |
| BadOrientation |
8 |
0.00 % |
608 |
0.00 % |
| LargeInsertSize |
29464 |
0.02 % |
2239264 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1166856 |
0.97 % |
88681056 |
1.04 % |
| Unmapped |
2605719 |
2.16 % |
198034644 |
2.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3491737996 |
100% |
| Passed |
2855583779 |
81.78 % |
| Trimmed |
204846330 |
5.87 % |
| Clipped |
9352877 |
0.27 % |
| Overlapping |
346444468 |
9.92 % |
| LowQuality |
75510542 |
2.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |