/EXTERNAL BLUEPRINT/methylation/K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs
BACK
SAMPLE K011973_K011977_K011978_K011979_K011980_K011981_K011982_K011983_K011984_K011985_K011986_K011987_K011988_K011989_K011990_K011991_K011992_K011993_K011994_K011995_K011996_K011997_22_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
16075573 |
21617 |
0.13 % |
| NonRefCpG |
813635 |
42 |
0.01 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
2512062 |
12.37 % |
955 |
1.79 % |
208969 |
21.99 % |
22 |
6.64 % |
| Intermediate (0.3-0.7) |
7216378 |
35.55 % |
8994 |
16.88 % |
356204 |
37.49 % |
77 |
23.09 % |
| Methylated (0.7-1) |
10571710 |
52.08 % |
43323 |
81.32 % |
384930 |
40.51 % |
236 |
70.27 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.880 |
|
0.610 |
|
0.830 |
|