/EXTERNAL BLUEPRINT/K011974_K011975_K011998_K011999_4_lane_gembs

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SAMPLE K011974_K011975_K011998_K011999_4_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 102362634 100.00 % 51181317 100.00 % 51181317 100.00 %
General Reads 58406444 57.06 % 29334432 57.31 % 29072012 56.80 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 73 0.00 % 35 0.00 % 38 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43956117 42.94 % 21846850 42.69 % 22109267 43.20 %
Bisulfite_reads C2T 30192896 29.50 % 15160482 29.62 % 15032414 29.37 %
Bisulfite_reads G2A 28213621 27.56 % 14173985 27.69 % 14039636 27.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 22321299
Average Unique 43.61 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2622142592 33.27 % 977054018 24.79 % 1645088574 41.74 %
Base Counts Overall C 1263074143 16.02 % 241935177 6.14 % 1021138966 25.91 %
Base Counts Overall G 1298322825 16.47 % 1039766236 26.38 % 258556589 6.56 %
Base Counts Overall T 2594264618 32.91 % 1630109039 41.36 % 964155579 24.46 %
Base Counts Overall N 104118640 1.32 % 52096939 1.32 % 52021701 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 27549371



Mapping Quality

Mapping Quality Histogram
K011974_K011975_K011998_K011999_4_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K011974_K011975_K011998_K011999_4_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K011999_1894941_2
EXTERNAL-K011998_1894940_2
EXTERNAL-K011974_1894916_2
EXTERNAL-K011975_1894917_2