/EXTERNAL BLUEPRINT/mapping_coverage/K011974_K011975_K011998_K011999_4_lane_gembs
BACK
SAMPLE K011974_K011975_K011998_K011999_4_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
48480118 |
100% |
3387454385 |
100% |
| Mapped |
47829728 |
98.66 % |
3338024745 |
98.54 % |
| Passed |
25795209 |
53.21 % |
1663401301 |
49.10 % |
| NotPassed |
22034519 |
45.45 % |
1674623444 |
49.44 % |
| |
|
|
|
|
| LowMAPQ |
11624536 |
23.98 % |
883464736 |
26.08 % |
| MateUnmapped |
650390 |
1.34 % |
49429640 |
1.46 % |
| Duplicate |
9941765 |
20.51 % |
755574140 |
22.31 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
2834 |
0.01 % |
215384 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
465380 |
0.96 % |
35368880 |
1.04 % |
| Unmapped |
650390 |
1.34 % |
49429640 |
1.46 % |
Base Level Counts
| Bases |
# |
% |
| Total |
1842927572 |
100% |
| Passed |
1527990848 |
82.91 % |
| Trimmed |
108487931 |
5.89 % |
| Clipped |
5363153 |
0.29 % |
| Overlapping |
174163118 |
9.45 % |
| LowQuality |
26922522 |
1.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |