/EXTERNAL BLUEPRINT/K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs/EXTERNAL-K010430_1798672_2
BACK
SAMPLE K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs LANE EXTERNAL-K010430_1798672_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 114369828 | 100.00 % | 57184914 | 100.00 % | 57184914 | 100.00 % |
| General Reads | 110005830 | 96.18 % | 55680648 | 97.37 % | 54325182 | 95.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 5 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 4363989 | 3.82 % | 1504261 | 2.63 % | 2859728 | 5.00 % |
| Bisulfite_reads C2T | 56904482 | 49.75 % | 28795046 | 50.35 % | 28109436 | 49.16 % |
| Bisulfite_reads G2A | 53101357 | 46.43 % | 26885607 | 47.02 % | 26215750 | 45.84 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 41669528 |
| Average Unique | 72.87 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 3151646661 | 36.26 % | 1221724971 | 28.11 % | 1929921690 | 44.41 % |
| Base Counts Overall C | 1129001581 | 12.99 % | 102867484 | 2.37 % | 1026134097 | 23.61 % |
| Base Counts Overall G | 1203459424 | 13.85 % | 1058794654 | 24.36 % | 144664770 | 3.33 % |
| Base Counts Overall T | 3074568984 | 35.37 % | 1905316431 | 43.84 % | 1169252553 | 26.90 % |
| Base Counts Overall N | 133430278 | 1.54 % | 57349924 | 1.32 % | 76080354 | 1.75 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 51879739 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 57184914 |
| 75 | 57184914 |
Insert Size Plot
| Insert Size Histogram |
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