/EXTERNAL BLUEPRINT/K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs/EXTERNAL-K010435_1798677_2
BACK
SAMPLE K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs LANE EXTERNAL-K010435_1798677_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19470526 | 100.00 % | 9735263 | 100.00 % | 9735263 | 100.00 % |
| General Reads | 17509946 | 89.93 % | 8927874 | 91.71 % | 8582072 | 88.15 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 49 | 0.00 % | 25 | 0.00 % | 24 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 1960531 | 10.07 % | 807364 | 8.29 % | 1153167 | 11.85 % |
| Bisulfite_reads C2T | 9052000 | 46.49 % | 4613101 | 47.39 % | 4438899 | 45.60 % |
| Bisulfite_reads G2A | 8457995 | 43.44 % | 4314798 | 44.32 % | 4143197 | 42.56 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6696241 |
| Average Unique | 68.78 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 497037567 | 33.59 % | 207156130 | 28.00 % | 289881437 | 39.18 % |
| Base Counts Overall C | 221409998 | 14.96 % | 49579499 | 6.70 % | 171830499 | 23.22 % |
| Base Counts Overall G | 239605570 | 16.19 % | 178517514 | 24.13 % | 61088056 | 8.26 % |
| Base Counts Overall T | 498957403 | 33.72 % | 294863407 | 39.85 % | 204093996 | 27.58 % |
| Base Counts Overall N | 22749438 | 1.54 % | 9763438 | 1.32 % | 12986000 | 1.76 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 8339674 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 9735263 |
| 75 | 9735263 |
Insert Size Plot
| Insert Size Histogram |
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