/EXTERNAL BLUEPRINT/K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs/EXTERNAL-K010437_1798679_2
BACK
SAMPLE K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs LANE EXTERNAL-K010437_1798679_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17894840 | 100.00 % | 8947420 | 100.00 % | 8947420 | 100.00 % |
| General Reads | 14023730 | 78.37 % | 7112061 | 79.49 % | 6911669 | 77.25 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 17 | 0.00 % | 7 | 0.00 % | 10 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 3871093 | 21.63 % | 1835352 | 20.51 % | 2035741 | 22.75 % |
| Bisulfite_reads C2T | 7235641 | 40.43 % | 3667924 | 40.99 % | 3567717 | 39.87 % |
| Bisulfite_reads G2A | 6788106 | 37.93 % | 3444144 | 38.49 % | 3343962 | 37.37 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 5368262 |
| Average Unique | 60.00 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 452366908 | 33.26 % | 182143018 | 26.79 % | 270223890 | 39.74 % |
| Base Counts Overall C | 210100703 | 15.45 % | 45661309 | 6.71 % | 164439394 | 24.18 % |
| Base Counts Overall G | 225968859 | 16.62 % | 171027483 | 25.15 % | 54941376 | 8.08 % |
| Base Counts Overall T | 450622718 | 33.13 % | 272198103 | 40.03 % | 178424615 | 26.24 % |
| Base Counts Overall N | 20948652 | 1.54 % | 8974007 | 1.32 % | 11974645 | 1.76 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6684957 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 75 | 8947420 |
| 75 | 8947420 |
Insert Size Plot
| Insert Size Histogram |
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