/EXTERNAL BLUEPRINT/mapping_coverage/K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs
BACK
SAMPLE K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
260855895 |
100% |
18430313132 |
100% |
| Mapped |
254757631 |
97.66 % |
17972943332 |
97.52 % |
| Passed |
128865077 |
49.40 % |
8531001782 |
46.29 % |
| NotPassed |
125892554 |
48.26 % |
9441941550 |
51.23 % |
| |
|
|
|
|
| LowMAPQ |
59661734 |
22.87 % |
4474630050 |
24.28 % |
| MateUnmapped |
6098264 |
2.34 % |
457369800 |
2.48 % |
| Duplicate |
62735448 |
24.05 % |
4705158600 |
25.53 % |
| BadOrientation |
4 |
0.00 % |
300 |
0.00 % |
| LargeInsertSize |
68248 |
0.03 % |
5118600 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
3427120 |
1.31 % |
257034000 |
1.39 % |
| Unmapped |
6098264 |
2.34 % |
457369800 |
2.48 % |
Base Level Counts
| Bases |
# |
% |
| Total |
9188183475 |
100% |
| Passed |
7426991579 |
80.83 % |
| Trimmed |
553194526 |
6.02 % |
| Clipped |
32850277 |
0.36 % |
| Overlapping |
624331416 |
6.79 % |
| LowQuality |
550815677 |
5.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |