/EXTERNAL BLUEPRINT/methylation/K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs
BACK
SAMPLE K010430_K010431_K010432_K010433_K010434_K010435_K010436_K010437_K010438_K010439_K010440_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
22728277 |
1121732 |
4.94 % |
| NonRefCpG |
822493 |
4302 |
0.52 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4627833 |
13.24 % |
140647 |
4.93 % |
359710 |
31.69 % |
2243 |
11.94 % |
| Intermediate (0.3-0.7) |
10617468 |
30.38 % |
492584 |
17.26 % |
396273 |
34.91 % |
4124 |
21.95 % |
| Methylated (0.7-1) |
19703642 |
56.38 % |
2220231 |
77.81 % |
379080 |
33.40 % |
12426 |
66.12 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.750 |
|
0.870 |
|
0.510 |
|
0.820 |
|