/EXTERNAL BLUEPRINT/K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs

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SAMPLE K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	274241570	100.00 %	137120785	100.00 %	137120785	100.00 %
General Reads	226797645	82.70 %	114547403	83.54 %	112250242	81.86 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	38	0.00 %	16	0.00 %	22	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	47443887	17.30 %	22573366	16.46 %	24870521	18.14 %
Bisulfite_reads C2T	116981909	42.66 %	59065814	43.08 %	57916095	42.24 %
Bisulfite_reads G2A	109815774	40.04 %	55481605	40.46 %	54334169	39.63 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	87867885
Average Unique	64.08 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	6990313966	33.54 %	2826270423	27.12 %	4164043543	39.96 %
Base Counts Overall C	3218985254	15.44 %	722324835	6.93 %	2496660419	23.96 %
Base Counts Overall G	3399292766	16.31 %	2582373547	24.78 %	816919219	7.84 %
Base Counts Overall T	6944804031	33.32 %	4151479529	39.84 %	2793324502	26.80 %
Base Counts Overall N	288963303	1.39 %	138731326	1.33 %	150231977	1.44 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	108669286

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010446_1798688_2
EXTERNAL-K010444_1798686_2
EXTERNAL-K010450_1798692_2
EXTERNAL-K010441_1798683_2
EXTERNAL-K010443_1798685_2
EXTERNAL-K010449_1798691_2
EXTERNAL-K010448_1798690_2
EXTERNAL-K010445_1798687_2
EXTERNAL-K010442_1798684_2
EXTERNAL-K010447_1798689_2