/EXTERNAL BLUEPRINT/mapping_coverage/K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs
BACK
SAMPLE K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
170820194 |
100% |
12030838899 |
100% |
| Mapped |
167352679 |
97.97 % |
11770775274 |
97.84 % |
| Passed |
67875305 |
39.73 % |
4309972224 |
35.82 % |
| NotPassed |
99477374 |
58.24 % |
7460803050 |
62.01 % |
| |
|
|
|
|
| LowMAPQ |
41377580 |
24.22 % |
3103318500 |
25.79 % |
| MateUnmapped |
3467515 |
2.03 % |
260063625 |
2.16 % |
| Duplicate |
56007350 |
32.79 % |
4200551250 |
34.91 % |
| BadOrientation |
4 |
0.00 % |
300 |
0.00 % |
| LargeInsertSize |
111618 |
0.07 % |
8371350 |
0.07 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1980822 |
1.16 % |
148561650 |
1.23 % |
| Unmapped |
3467515 |
2.03 % |
260063625 |
2.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
4620416775 |
100% |
| Passed |
3810527465 |
82.47 % |
| Trimmed |
279779201 |
6.06 % |
| Clipped |
16085565 |
0.35 % |
| Overlapping |
294358986 |
6.37 % |
| LowQuality |
219665558 |
4.75 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |