/EXTERNAL BLUEPRINT/methylation/K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs
BACK
SAMPLE K010441_K010442_K010443_K010444_K010445_K010446_K010447_K010448_K010449_K010450_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
18902266 |
89907 |
0.48 % |
| NonRefCpG |
904436 |
265 |
0.03 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3651082 |
14.44 % |
9854 |
4.20 % |
317747 |
28.68 % |
148 |
9.69 % |
| Intermediate (0.3-0.7) |
8598418 |
34.00 % |
41774 |
17.81 % |
406951 |
36.74 % |
343 |
22.42 % |
| Methylated (0.7-1) |
13039668 |
51.56 % |
182913 |
77.99 % |
383103 |
34.58 % |
1039 |
67.89 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.710 |
|
0.870 |
|
0.540 |
|
0.830 |
|