/EXTERNAL BLUEPRINT/mapping_coverage/K010461_K010462_K010463_K010464_K010465_K010466_K010467_K010468_K010469_K010470_10_lane_gembs
BACK
SAMPLE K010461_K010462_K010463_K010464_K010465_K010466_K010467_K010468_K010469_K010470_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
194726210 |
100% |
13614760454 |
100% |
| Mapped |
190171969 |
97.66 % |
13273192379 |
97.49 % |
| Passed |
98269704 |
50.47 % |
6380522504 |
46.86 % |
| NotPassed |
91902265 |
47.20 % |
6892669875 |
50.63 % |
| |
|
|
|
|
| LowMAPQ |
44920422 |
23.07 % |
3369031650 |
24.75 % |
| MateUnmapped |
4554241 |
2.34 % |
341568075 |
2.51 % |
| Duplicate |
44067575 |
22.63 % |
3305068125 |
24.28 % |
| BadOrientation |
10 |
0.00 % |
750 |
0.00 % |
| LargeInsertSize |
142284 |
0.07 % |
10671300 |
0.08 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2771974 |
1.42 % |
207898050 |
1.53 % |
| Unmapped |
4554241 |
2.34 % |
341568075 |
2.51 % |
Base Level Counts
| Bases |
# |
% |
| Total |
6858939675 |
100% |
| Passed |
5553329618 |
80.96 % |
| Trimmed |
414555712 |
6.04 % |
| Clipped |
23329938 |
0.34 % |
| Overlapping |
455087233 |
6.63 % |
| LowQuality |
412637174 |
6.02 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |