/EXTERNAL BLUEPRINT/methylation/K010461_K010462_K010463_K010464_K010465_K010466_K010467_K010468_K010469_K010470_10_lane_gembs
BACK
SAMPLE K010461_K010462_K010463_K010464_K010465_K010466_K010467_K010468_K010469_K010470_10_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
21296567 |
366171 |
1.72 % |
| NonRefCpG |
879371 |
1190 |
0.14 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
4232419 |
13.62 % |
38817 |
4.01 % |
347204 |
30.08 % |
526 |
8.93 % |
| Intermediate (0.3-0.7) |
10078460 |
32.44 % |
169524 |
17.52 % |
416228 |
36.06 % |
1287 |
21.81 % |
| Methylated (0.7-1) |
16756598 |
53.94 % |
759328 |
78.47 % |
390974 |
33.87 % |
4088 |
69.26 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.730 |
|
0.870 |
|
0.520 |
|
0.830 |
|