/EXTERNAL BLUEPRINT/mapping_coverage/K012131_1_lane_gembs
BACK
SAMPLE K012131_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
103872365 |
100% |
7185824959 |
100% |
| Mapped |
102851096 |
99.02 % |
7108208515 |
98.92 % |
| Passed |
61288617 |
59.00 % |
3949460111 |
54.96 % |
| NotPassed |
41562479 |
40.01 % |
3158748404 |
43.96 % |
| |
|
|
|
|
| LowMAPQ |
24037822 |
23.14 % |
1826874472 |
25.42 % |
| MateUnmapped |
1021269 |
0.98 % |
77616444 |
1.08 % |
| Duplicate |
16506167 |
15.89 % |
1254468692 |
17.46 % |
| BadOrientation |
2 |
0.00 % |
152 |
0.00 % |
| LargeInsertSize |
3952 |
0.00 % |
300352 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1014536 |
0.98 % |
77104736 |
1.07 % |
| Unmapped |
1021269 |
0.98 % |
77616444 |
1.08 % |
Base Level Counts
| Bases |
# |
% |
| Total |
4419022432 |
100% |
| Passed |
3597954967 |
81.42 % |
| Trimmed |
257863824 |
5.84 % |
| Clipped |
12044639 |
0.27 % |
| Overlapping |
457517682 |
10.35 % |
| LowQuality |
93641320 |
2.12 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |