/EXTERNAL BLUEPRINT/methylation/K012131_1_lane_gembs

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SAMPLE K012131_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 18812844 73828 0.39 %
NonRefCpG 862229 220 0.03 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012131_1_lane_gembs_coverage_refCpG.png ./IMG//K012131_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012131_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012131_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012131_1_lane_gembs_quality_refcpg.png ./IMG//K012131_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012131_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4120156 16.39 % 7471 3.74 % 293585 28.12 % 94 8.38 %
Intermediate (0.3-0.7) 8747404 34.79 % 36662 18.37 % 387195 37.09 % 251 22.39 %
Methylated (0.7-1) 12276500 48.82 % 155429 77.88 % 363266 34.79 % 778 69.23 %
Median Methylation 0.690 0.860 0.540 0.830