/EXTERNAL BLUEPRINT/K012129_1_lane_gembs

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SAMPLE K012129_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 76202210 100.00 % 38101105 100.00 % 38101105 100.00 %
General Reads 72427261 95.05 % 36373865 95.47 % 36053396 94.63 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 3774949 4.95 % 1727240 4.53 % 2047709 5.37 %
Bisulfite_reads C2T 37530599 49.25 % 18845548 49.46 % 18685051 49.04 %
Bisulfite_reads G2A 34896662 45.79 % 17528317 46.00 % 17368345 45.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 27202873
Average Unique 71.40 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2100477054 35.80 % 810925242 27.64 % 1289551812 43.96 %
Base Counts Overall C 819271566 13.96 % 111228268 3.79 % 708043298 24.13 %
Base Counts Overall G 837957075 14.28 % 714371235 24.35 % 123585840 4.21 %
Base Counts Overall T 2033480244 34.66 % 1259109961 42.92 % 774370283 26.39 %
Base Counts Overall N 76384231 1.30 % 38150379 1.30 % 38233852 1.30 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 33612542



Mapping Quality

Mapping Quality Histogram
K012129_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012129_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012129_1895071_2