/EXTERNAL BLUEPRINT/mapping_coverage/K012129_1_lane_gembs
BACK
SAMPLE K012129_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
64906168 |
100% |
4460330502 |
100% |
| Mapped |
64076187 |
98.72 % |
4397251946 |
98.59 % |
| Passed |
40728205 |
62.75 % |
2622805314 |
58.80 % |
| NotPassed |
23347982 |
35.97 % |
1774446632 |
39.78 % |
| |
|
|
|
|
| LowMAPQ |
14949898 |
23.03 % |
1136192248 |
25.47 % |
| MateUnmapped |
829981 |
1.28 % |
63078556 |
1.41 % |
| Duplicate |
7536790 |
11.61 % |
572796040 |
12.84 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
2550 |
0.00 % |
193800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
858744 |
1.32 % |
65264544 |
1.46 % |
| Unmapped |
829981 |
1.28 % |
63078556 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2923781788 |
100% |
| Passed |
2302579957 |
78.75 % |
| Trimmed |
169632781 |
5.80 % |
| Clipped |
7851039 |
0.27 % |
| Overlapping |
293125435 |
10.03 % |
| LowQuality |
150592576 |
5.15 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |