/EXTERNAL BLUEPRINT/methylation/K012129_1_lane_gembs

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SAMPLE K012129_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 15547268 8620 0.06 %
NonRefCpG 998210 21 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012129_1_lane_gembs_coverage_refCpG.png ./IMG//K012129_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012129_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012129_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012129_1_lane_gembs_quality_refcpg.png ./IMG//K012129_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012129_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3189225 16.55 % 729 3.00 % 271610 24.08 % 12 8.01 %
Intermediate (0.3-0.7) 6953062 36.07 % 4559 18.73 % 426725 37.83 % 35 23.97 %
Methylated (0.7-1) 9133464 47.38 % 19057 78.27 % 429529 38.08 % 102 68.02 %
Median Methylation 0.670 0.870 0.580 0.830