/EXTERNAL BLUEPRINT/mapping_coverage/K012037_K012072_K012073_K012074_K012075_K012076_K012077_K012078_K012114_K012115_10_lane_gembs
BACK
SAMPLE K012037_K012072_K012073_K012074_K012075_K012076_K012077_K012078_K012114_K012115_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
137343450 |
100% |
9627321346 |
100% |
| Mapped |
134531665 |
97.95 % |
9413625686 |
97.78 % |
| Passed |
68012468 |
49.52 % |
4358166714 |
45.27 % |
| NotPassed |
66519197 |
48.43 % |
5055458972 |
52.51 % |
| |
|
|
|
|
| LowMAPQ |
33003996 |
24.03 % |
2508303696 |
26.05 % |
| MateUnmapped |
2811785 |
2.05 % |
213695660 |
2.22 % |
| Duplicate |
31371441 |
22.84 % |
2384229516 |
24.77 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
77506 |
0.06 % |
5890456 |
0.06 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2066254 |
1.50 % |
157035304 |
1.63 % |
| Unmapped |
2811785 |
2.05 % |
213695660 |
2.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
4757447468 |
100% |
| Passed |
3934518074 |
82.70 % |
| Trimmed |
283980168 |
5.97 % |
| Clipped |
15370665 |
0.32 % |
| Overlapping |
383910089 |
8.07 % |
| LowQuality |
139668472 |
2.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |