/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012039_1894981_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012039_1894981_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 92712410 | 100.00 % | 46356205 | 100.00 % | 46356205 | 100.00 % |
| General Reads | 67154887 | 72.43 % | 33774120 | 72.86 % | 33380767 | 72.01 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 9 | 0.00 % | 5 | 0.00 % | 4 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 25557514 | 27.57 % | 12582080 | 27.14 % | 12975434 | 27.99 % |
| Bisulfite_reads C2T | 34670593 | 37.40 % | 17433113 | 37.61 % | 17237480 | 37.18 % |
| Bisulfite_reads G2A | 32484303 | 35.04 % | 16341012 | 35.25 % | 16143291 | 34.82 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 26199153 |
| Average Unique | 56.52 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 2243938085 | 31.43 % | 990875147 | 27.76 % | 1253062938 | 35.11 % |
| Base Counts Overall C | 1272328721 | 17.82 % | 460741892 | 12.91 % | 811586829 | 22.74 % |
| Base Counts Overall G | 1292417282 | 18.10 % | 822353196 | 23.04 % | 470064086 | 13.17 % |
| Base Counts Overall T | 2236175701 | 31.32 % | 1248486057 | 34.98 % | 987689644 | 27.67 % |
| Base Counts Overall N | 93995781 | 1.32 % | 46971493 | 1.32 % | 47024288 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 32069441 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 46356205 |
| 76 | 46356205 |
Insert Size Plot
| Insert Size Histogram |
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