/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012080_1895022_2
BACK
SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012080_1895022_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 19047628 | 100.00 % | 9523814 | 100.00 % | 9523814 | 100.00 % |
| General Reads | 11380335 | 59.75 % | 5726720 | 60.13 % | 5653615 | 59.36 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7667291 | 40.25 % | 3797093 | 39.87 % | 3870198 | 40.64 % |
| Bisulfite_reads C2T | 5881310 | 30.88 % | 2958968 | 31.07 % | 2922342 | 30.68 % |
| Bisulfite_reads G2A | 5499027 | 28.87 % | 2767753 | 29.06 % | 2731274 | 28.68 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4460140 |
| Average Unique | 46.83 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 451905384 | 30.81 % | 201840603 | 27.52 % | 250064781 | 34.10 % |
| Base Counts Overall C | 267778130 | 18.26 % | 100427575 | 13.69 % | 167350555 | 22.82 % |
| Base Counts Overall G | 275940446 | 18.81 % | 171096143 | 23.33 % | 104844303 | 14.30 % |
| Base Counts Overall T | 451728612 | 30.80 % | 250318584 | 34.13 % | 201410028 | 27.46 % |
| Base Counts Overall N | 19314784 | 1.32 % | 9650773 | 1.32 % | 9664011 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 5472814 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9523814 |
| 76 | 9523814 |
Insert Size Plot
| Insert Size Histogram |
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