/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012081_1895023_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012081_1895023_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 18187566 | 100.00 % | 9093783 | 100.00 % | 9093783 | 100.00 % |
| General Reads | 8807111 | 48.42 % | 4432741 | 48.74 % | 4374370 | 48.10 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 2 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 9380452 | 51.58 % | 4661040 | 51.26 % | 4719412 | 51.90 % |
| Bisulfite_reads C2T | 4550958 | 25.02 % | 2290038 | 25.18 % | 2260920 | 24.86 % |
| Bisulfite_reads G2A | 4256156 | 23.40 % | 2142705 | 23.56 % | 2113451 | 23.24 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3453861 |
| Average Unique | 37.98 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 404653825 | 28.89 % | 193388772 | 27.62 % | 211265053 | 30.17 % |
| Base Counts Overall C | 281948930 | 20.13 % | 126036677 | 18.00 % | 155912253 | 22.27 % |
| Base Counts Overall G | 289749391 | 20.69 % | 158915337 | 22.70 % | 130834054 | 18.68 % |
| Base Counts Overall T | 405651254 | 28.97 % | 212666246 | 30.37 % | 192985008 | 27.56 % |
| Base Counts Overall N | 18439182 | 1.32 % | 9214259 | 1.32 % | 9224923 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4239583 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 9093783 |
| 76 | 9093783 |
Insert Size Plot
| Insert Size Histogram |
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