/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012082_1895024_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012082_1895024_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 21861796 | 100.00 % | 10930898 | 100.00 % | 10930898 | 100.00 % |
| General Reads | 12702890 | 58.11 % | 6397162 | 58.52 % | 6305728 | 57.69 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 1 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 9158903 | 41.89 % | 4533735 | 41.48 % | 4625168 | 42.31 % |
| Bisulfite_reads C2T | 6561644 | 30.01 % | 3303688 | 30.22 % | 3257956 | 29.81 % |
| Bisulfite_reads G2A | 6141249 | 28.09 % | 3093475 | 28.30 % | 3047774 | 27.88 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4970508 |
| Average Unique | 45.47 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 508259340 | 30.19 % | 229187081 | 27.23 % | 279072259 | 33.16 % |
| Base Counts Overall C | 317589713 | 18.87 % | 123419909 | 14.66 % | 194169804 | 23.07 % |
| Base Counts Overall G | 326406005 | 19.39 % | 198135012 | 23.54 % | 128270993 | 15.24 % |
| Base Counts Overall T | 508940963 | 30.23 % | 279861343 | 33.25 % | 229079620 | 27.22 % |
| Base Counts Overall N | 22162271 | 1.32 % | 11075801 | 1.32 % | 11086470 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 6101035 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 10930898 |
| 76 | 10930898 |
Insert Size Plot
| Insert Size Histogram |
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