/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012083_1895025_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012083_1895025_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15663732 | 100.00 % | 7831866 | 100.00 % | 7831866 | 100.00 % |
| General Reads | 8372278 | 53.45 % | 4213153 | 53.80 % | 4159125 | 53.11 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 2 | 0.00 % | 1 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7291452 | 46.55 % | 3618712 | 46.20 % | 3672740 | 46.89 % |
| Bisulfite_reads C2T | 4310547 | 27.52 % | 2168643 | 27.69 % | 2141904 | 27.35 % |
| Bisulfite_reads G2A | 4061733 | 25.93 % | 2044511 | 26.11 % | 2017222 | 25.76 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 3283463 |
| Average Unique | 41.92 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 356337931 | 29.54 % | 162671462 | 26.97 % | 193666469 | 32.11 % |
| Base Counts Overall C | 235715035 | 19.54 % | 97082323 | 16.10 % | 138632712 | 22.99 % |
| Base Counts Overall G | 242072186 | 20.07 % | 141584583 | 23.48 % | 100487603 | 16.66 % |
| Base Counts Overall T | 356102637 | 29.52 % | 193778771 | 32.13 % | 162323866 | 26.92 % |
| Base Counts Overall N | 15879575 | 1.32 % | 7936543 | 1.32 % | 7943032 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4018310 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7831866 |
| 76 | 7831866 |
Insert Size Plot
| Insert Size Histogram |
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