/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012084_1895026_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012084_1895026_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 17714836 | 100.00 % | 8857418 | 100.00 % | 8857418 | 100.00 % |
| General Reads | 10318581 | 58.25 % | 5193031 | 58.63 % | 5125550 | 57.87 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 7 | 0.00 % | 4 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 7396248 | 41.75 % | 3664383 | 41.37 % | 3731865 | 42.13 % |
| Bisulfite_reads C2T | 5330616 | 30.09 % | 2682265 | 30.28 % | 2648351 | 29.90 % |
| Bisulfite_reads G2A | 4987972 | 28.16 % | 2510770 | 28.35 % | 2477202 | 27.97 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 4020770 |
| Average Unique | 45.39 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 414679123 | 30.40 % | 183831908 | 26.95 % | 230847215 | 33.85 % |
| Base Counts Overall C | 254888372 | 18.69 % | 96268884 | 14.12 % | 158619488 | 23.26 % |
| Base Counts Overall G | 261691363 | 19.18 % | 161673431 | 23.71 % | 100017932 | 14.66 % |
| Base Counts Overall T | 414822053 | 30.41 % | 231271822 | 33.91 % | 183550231 | 26.91 % |
| Base Counts Overall N | 17961461 | 1.32 % | 8975141 | 1.32 % | 8986320 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 4947679 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 8857418 |
| 76 | 8857418 |
Insert Size Plot
| Insert Size Histogram |
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