/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012085_1895027_2
BACK
SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012085_1895027_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 15795936 | 100.00 % | 7897968 | 100.00 % | 7897968 | 100.00 % |
| General Reads | 6835658 | 43.27 % | 3441517 | 43.57 % | 3394141 | 42.97 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 3 | 0.00 % | 1 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 8960274 | 56.73 % | 4456448 | 56.43 % | 4503826 | 57.03 % |
| Bisulfite_reads C2T | 3528620 | 22.34 % | 1776479 | 22.49 % | 1752141 | 22.18 % |
| Bisulfite_reads G2A | 3307042 | 20.94 % | 1665041 | 21.08 % | 1642001 | 20.79 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 2644474 |
| Average Unique | 33.48 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 350430783 | 28.81 % | 167550021 | 27.55 % | 182880762 | 30.07 % |
| Base Counts Overall C | 246096630 | 20.23 % | 108528358 | 17.85 % | 137568272 | 22.62 % |
| Base Counts Overall G | 252175351 | 20.73 % | 140184859 | 23.05 % | 111990492 | 18.42 % |
| Base Counts Overall T | 351568106 | 28.91 % | 183877782 | 30.24 % | 167690324 | 27.57 % |
| Base Counts Overall N | 16016202 | 1.32 % | 8002516 | 1.32 % | 8013686 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 3267076 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 7897968 |
| 76 | 7897968 |
Insert Size Plot
| Insert Size Histogram |
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