/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012087_1895029_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012087_1895029_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 36331460 | 100.00 % | 18165730 | 100.00 % | 18165730 | 100.00 % |
| General Reads | 17168140 | 47.25 % | 8645211 | 47.59 % | 8522929 | 46.92 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 4 | 0.00 % | 2 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 19163316 | 52.75 % | 9520517 | 52.41 % | 9642799 | 53.08 % |
| Bisulfite_reads C2T | 8855317 | 24.37 % | 4458527 | 24.54 % | 4396790 | 24.20 % |
| Bisulfite_reads G2A | 8312827 | 22.88 % | 4186686 | 23.05 % | 4126141 | 22.71 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 6654521 |
| Average Unique | 36.63 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 813849661 | 29.09 % | 386546105 | 27.63 % | 427303556 | 30.55 % |
| Base Counts Overall C | 558305038 | 19.96 % | 239682049 | 17.14 % | 318622989 | 22.78 % |
| Base Counts Overall G | 573248256 | 20.49 % | 324993845 | 23.23 % | 248254411 | 17.75 % |
| Base Counts Overall T | 815289746 | 29.14 % | 429134744 | 30.68 % | 386155002 | 27.61 % |
| Base Counts Overall N | 36829719 | 1.32 % | 18404467 | 1.32 % | 18425252 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 8196261 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 18165730 |
| 76 | 18165730 |
Insert Size Plot
| Insert Size Histogram |
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