/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012118_1895060_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012118_1895060_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 41852490 | 100.00 % | 20926245 | 100.00 % | 20926245 | 100.00 % |
| General Reads | 31837646 | 76.07 % | 16003517 | 76.48 % | 15834129 | 75.67 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 3 | 0.00 % | 1 | 0.00 % | 2 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 10014841 | 23.93 % | 4922727 | 23.52 % | 5092114 | 24.33 % |
| Bisulfite_reads C2T | 16448662 | 39.30 % | 8267032 | 39.51 % | 8181630 | 39.10 % |
| Bisulfite_reads G2A | 15388987 | 36.77 % | 7736486 | 36.97 % | 7652501 | 36.57 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 12301631 |
| Average Unique | 58.79 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 984847447 | 30.56 % | 448173311 | 27.81 % | 536674136 | 33.31 % |
| Base Counts Overall C | 601394821 | 18.66 % | 233295922 | 14.48 % | 368098899 | 22.84 % |
| Base Counts Overall G | 612852749 | 19.02 % | 373895453 | 23.20 % | 238957296 | 14.83 % |
| Base Counts Overall T | 981115686 | 30.44 % | 534749989 | 33.19 % | 446365697 | 27.70 % |
| Base Counts Overall N | 42431027 | 1.32 % | 21206190 | 1.32 % | 21224837 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 15240485 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 20926245 |
| 76 | 20926245 |
Insert Size Plot
| Insert Size Histogram |
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